Are you using the auto top up to actually top up or are you putting it onto an on/off timer to pump an amount of ferts in?
I only ask as if using as a top up your rates of evaporation could greatly vary and this will effect dosing. You'd really need a fairly constant measureable rate of top up to know you were adding enough ferts. You'd be better off with a designated dosing system or just sticking with manual introduction IMO. Dosing ferts doesn't have to be a precise art but you do need to ensure your adding enough regularly.