As I understand it, while in aquarium water mostly oxidation reactions take place (because the plants in a densely planted aquarium maintain high oxygen levels => so the water is highly oxygenated, with redox normally around +400 mV), in organic sediment it is the opposite. There, within a few hours after the substrate has been flooded with water, the aerobic bacteria will drain all available oxygen and die, and anaerobic bacteria will take their place, which will start to reduce rather than oxidize the surrounding substances. There may still be aerobic bacteria in the top layer of the substrate (to a depth of about 0.5 cm), because some oxygen from the water still gets there by diffusion. The lower down, however, the more the substrate will be dominated by various strongly reduced compounds => of the minerals there are mainly reduced phosphorus (P), calcium (Ca), magnesium (Mg), iron (Fe), manganese (Mn), molybdenum (Mo) and silicon (Si), and of the gases mainly carbon dioxide (CO2), methane (CH4), nitrogen (N2), hydrogen (H2) or hydrogen sulphide (H2S). Conversely, the availability of substances such as zinc (Zn), copper (Cu) and sulphur (S) is reportedly decreasing. The amount and percentage of these substances is likely to depend most on the mineral composition of the substrate and on the microbial composition and organic content. In any case, the concentrations of such dissolved nutrients in the substrate may be several orders of magnitude higher than those in the water column. To give you an idea: In one scientific study, they measured Fe2+ concentrations at the sediment-water column boundary of 0.55 ppm, at 5 cm depth around 2.8 ppm, and at 35 cm depth a hard-to-believe 22 ppm. So, if I were to summarize, it seems to me that while in the heavily oxygenated water column of our aquariums, the plants struggle more with phosphorus and iron/manganese deficiency, in the organic substrate they struggle with their toxicity. In inert sand (where there is not much detritus), the situation is probably a little different, as the bacteria will lack organic compounds from which to extract and convert (reduce) these substances. Of course, when plants are transplanted or the substrate is otherwise disturbed, the whole redox cascade will be disrupted and a lot of those reduced substances will leach into the water column (where they will probably oxidize very quickly). Finally, I would like to point out that I am not an expert on these things. So I am describing it as I understand it from reading the literature. If I am wrong about anything, I apologize. Everyone is of course free to check or study this in more detail. Probably the most information on this can be found in the literature on wetland or rice sediments (unfortunately, practically nobody studies aquarium sediments in this detail, as far as I know).